Summary | Included libraries | Package variables | Synopsis | Description | General documentation | Methods |
WebCvs | Raw content |
use Bio::DB::GFF;
my $type = Bio::DB::GFF::Typename->new(similarity => 'BLAT_EST_GENOME'); my $segment = $segment->features($type);
asString | Description | Code |
clone | Description | Code |
match | Description | Code |
method | Description | Code |
new | Description | Code |
source | Description | Code |
asString | code | next | Top |
Title : asStringThis method is used by operator overloading to overload the '""' operator. |
clone | code | prev | next | Top |
Title : cloneThis method creates an exact copy of the object. |
match | code | prev | next | Top |
Title : matchThis match allows Sequence:Link and Sequence: to match, but not Sequence:Link and Sequence:Genomic_canonical. |
method | code | prev | next | Top |
Title : method |
new | code | prev | next | Top |
Title : new |
source | code | prev | next | Top |
Title : source |
asString | description | prev | next | Top |
$_[0]->[1] ? join ':',@{$_[0]} : $_[0]->[0];}
clone | description | prev | next | Top |
my $self = shift; return bless [@$self],ref $self;}
match | description | prev | next | Top |
my $self = shift; my $target = shift; my ($method,$source); if (UNIVERSAL::isa($target,'Bio::DB::GFF::Typename')) { ($method,$source) = ($target->method,$target->source); } else { ($method,$source) = split /:/,$target; } return if $method ne '' && $self->method ne '' && $method ne $self->method; return if $source ne '' && $self->source ne '' && $source ne $self->source; 1; } 1;}
method | description | prev | next | Top |
my $self = shift; my $d = $self->[0]; $self->[0] = shift if @_; $d;}
new | description | prev | next | Top |
my $package = shift; my ($method,$source) = @_; $method ||= ''; $source ||= ''; if ($source eq '' && $method =~ /^(\w+):(\w+)$/) { $method = $1; $source = $2; } return $OBJECT_CACHE{"$method:$source"} ||= bless [$method,$source],$package;}
source | description | prev | next | Top |
my $self = shift; my $d = $self->[1]; $self->[1] = shift if @_; $d;}
BUGS | Top |
SEE ALSO | Top |
AUTHOR | Top |