Raw content of Bio::Factory::SequenceFactoryI # $Id: SequenceFactoryI.pm,v 1.6 2002/10/22 07:45:14 lapp Exp $ # # BioPerl module for Bio::Factory::SequenceFactoryI # # Cared for by Jason Stajich <jason@bioperl.org> # # Copyright Jason Stajich # # You may distribute this module under the same terms as perl itself # POD documentation - main docs before the code =head1 NAME Bio::Factory::SequenceFactoryI - This interface allows for generic building of sequences in factories which create sequences (like SeqIO) =head1 SYNOPSIS # do not use this object directly it is an interface # get a Bio::Factory::SequenceFactoryI object like use Bio::Seq::SeqFactory; my $seqbuilder = new Bio::Seq::SeqFactory('type' => 'Bio::PrimarySeq'); my $seq = $seqbuilder->create(-seq => 'ACTGAT', -display_id => 'exampleseq'); print "seq is a ", ref($seq), "\n"; =head1 DESCRIPTION Describe the interface here =head1 FEEDBACK =head2 Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/MailList.shtml - About the mailing lists =head2 Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bioperl.org http://bugzilla.bioperl.org/ =head1 AUTHOR - Jason Stajich Email jason@bioperl.org Describe contact details here =head1 CONTRIBUTORS Additional contributors names and emails here =head1 APPENDIX The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ =cut # Let the code begin... package Bio::Factory::SequenceFactoryI; use vars qw(@ISA); use strict; use Bio::Factory::ObjectFactoryI; @ISA = qw(Bio::Factory::ObjectFactoryI); =head2 create Title : create Usage : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name'); Function: Instantiates new Bio::PrimarySeqI (or one of its child classes) This object allows us to genericize the instantiation of sequence objects. Returns : Bio::PrimarySeqI Args : initialization parameters specific to the type of sequence object we want. Typically -seq => $str, -display_id => $name =cut 1;