| Abstract | Abstract interface for indexing a flat file |
| AbstractSeq | Base class for AbstractSeq s |
| Blast | Indexes Blast reports and supports retrieval based on query accession(s) |
| EMBL | Interface for indexing (multiple) EMBL/Swissprot
.dat files (ie flat file embl/swissprot format). |
| Fasta | Interface for indexing (multiple) fasta files |
| Fastq | Interface for indexing (multiple) fastq files |
| GenBank | Interface for indexing (multiple) GenBank
.seq files (ie flat file GenBank format). |
| SwissPfam | Interface for indexing swisspfam files |
| Swissprot | Interface for indexing (multiple) Swissprot
.dat files (ie flat file swissprot format). |