Raw content of Bio::Map::LinkagePosition # BioPerl module for Bio::Map::LinkagePosition # # Cared for by Chad Matsalla <bioinformatics1@dieselwurks.com> # # Copyright Chad Matsalla # # You may distribute this module under the same terms as perl itself # POD documentation - main docs before the code =head1 NAME Bio::Map::LinkagePosition - Create a Position for a Marker that will be placed on a Bio::Map::LinkageMap =head1 SYNOPSIS use Bio::Map::Position; my $position = new Bio::Map::LinkagePosition(-positions => 1, -distance => 22.1 ); # can get listing of positions my @positions = $position->each_position; =head1 DESCRIPTION Position for a Bio::Map::MarkerI compliant object that will be placed on a Bio::Map::LinkageMap. See L<Bio::Map::MarkerI> and L<Bio::Map::LinkageMap> for details =head1 FEEDBACK =head2 Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/MailList.shtml - About the mailing lists =head2 Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bioperl.org http://bugzilla.bioperl.org/ =head1 AUTHOR - Chad Matsalla Email bioinformatics1@dieselwurks.com =head1 CONTRIBUTORS Lincoln Stein, lstein@cshl.org Heikki Lehvaslaiho, heikki@ebi.ac.uk Jason Stajich jason@bioperl.org =head1 APPENDIX The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ =cut # Let the code begin... package Bio::Map::LinkagePosition; use vars qw(@ISA); use strict; require 'dumpvar.pl'; use Bio::Map::OrderedPosition; @ISA = qw(Bio::Map::OrderedPosition); =head2 new Title : new Usage : my $obj = new Bio::Map::LinkagePosition(-positions => $position, -distance => $distance ); Function: Builds a new Bio::Map::LinkagePosition object Returns : Bio::Map::LinkagePosition Args : -order => the relative order of this marker on a linkage map -positions => positions on a map =cut =head2 Bio::Map::PositionI methods =cut =head2 order Title : order Usage : $o_position->order($new_position) _or_ $o_position->order() Function: get/set the order position of this position in a map Returns : Args : If $new_position is provided, the current position of this Position will be set to $new_position. =cut 1;