Raw content of Bio::Search::Processor # # BioPerl module for Bio::Search::Processor # # Cared for by Aaron Mackey <amackey@virginia.edu> # # Copyright Aaron Mackey # # You may distribute this module under the same terms as perl itself # POD documentation - main docs before the code =head1 NAME Bio::Search::Processor - DESCRIPTION of Object =head1 SYNOPSIS Give standard usage here =head1 DESCRIPTION Describe the object here =head1 FEEDBACK =head2 Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bio.perl.org/MailList.html - About the mailing lists =head2 Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bio.perl.org http://bugzilla.bioperl.org/ =head1 AUTHOR - Aaron Mackey Email amackey@virginia.edu Describe contact details here =head1 APPENDIX The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ =cut # Let the code begin... package Bio::Search::Processor; use strict; use vars qw(@ISA); =head2 new Title : new Usage : $proc = new Bio::Search::Processor -file => $filename, -algorithm => 'Algorithm' ; Function: Used to specify and initialize a data processor of search algorithm results. Returns : A processor specific to the algorithm type, if it exists. Args : -file => filename -algorithm => algorithm specifier -fh => filehandle to attach to (file or fh required) =cut sub new { my $type = shift; my $proc; my ($module, $load, $algorithm); my %args = @_; exists $args{'-algorithm'} or do { print STDERR "Must supply an algorithm!"; return undef; }; $algorithm = $args{'-algorithm'} || $args{'-ALGORITHM'}; $module = "_<Bio/Search/Processor/$algorithm.pm"; $load = "Bio/Search/Processor/$algorithm.pm"; unless ( $main::{$module} ) { eval { require $load; }; if ( $@ ) { print STDERR <<"EOF"; $load: $algorithm cannot be found Exception $@ For more information about the Search/Processor system please see the Processor docs. This includes ways of checking for processors at compile time, not run time EOF return undef; } } $proc = "Bio::Search::Processor::$algorithm"->new(@_); return $proc; } 1;