Bio::Search::Result
WABAResult
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Summary
Bio::Search::Result::WABAResult - Result object for WABA alignment output
Package variables
No package variables defined.
Included modules
Inherit
Synopsis
# use this object exactly as you would a GenericResult
# the only extra method is query_database which is the
# name of the file where the query sequence came from
Description
This object is for WABA result output, there is little difference
between this object and a GenericResult save the addition of one
method query_database. Expect many of the fields for GenericResult to
be empty however as WABA was not intended to provide a lot of extra
information other than the alignment.
Methods
Methods description
Title : new
Usage : my $obj = new Bio::Search::Result::WABAResult();
Function: Builds a new Bio::Search::Result::WABAResult object
Returns : Bio::Search::Result::WABAResult
Args : -query_database => "name of the database where the query came from" |
Title : query_database
Usage : $obj->query_database($newval)
Function: Data field for the database filename where the
query sequence came from
Returns : value of query_database
Args : newvalue (optional) |
Methods code
sub new
{ my($class,@args) = @_;
my $self = $class->SUPER::new(@args);
my ($db) = $self->_rearrange([qw(QUERY_DATABASE)], @args);
defined $db && $self->query_database($db);
return $self; } | sub query_database
{ my ($self,$value) = @_;
if( defined $value) {
$self->{'query_database'} = $value;
}
return $self->{'query_database'};} | General documentation
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| AUTHOR - Jason Stajich | Top |
Additional contributors names and emails here
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
| All other methods are inherited from Bio::Search::Result::GenericResult | Top |