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Summary

Bio::SearchIO::chadosxpr - chadosxpr sequence input/output stream

Package variables

Included modules

Inherit

Bio::SearchIO::chado

Synopsis

It is probably best not to use this object directly, but
rather go through the SearchIO handler system. Go:

    $stream = Bio::SearchIO->new(-file => $filename, -format => 'chadosxpr');

    while ( my $seq = $stream->next_seq() ) {
	# do something with $seq
    }

Description

This object can transform Bio::Search objects to and from chadosxpr flat
file databases. CURRENTLY ONLY TO

Methods

Methods description

None available.

Methods code

sub default_handler_class {

    return "Data::Stag::SxprWriter";
} 

1;

}

General documentation

User feedback is an integral part of the evolution of this
and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists.
Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://www.bioperl.org/MailList.shtml  - About the mailing lists

Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution.
Bug reports can be submitted via email or the web:

  bioperl-bugs@bio.perl.org
  http://bio.perl.org/bioperl-bugs/

Email cjm@fruitfly.org

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _