Raw content of Bio::SeqIO::chadoxml # $Id: chadoxml.pm,v 1.2 2002/12/05 13:46:36 heikki Exp $ # # BioPerl module for Bio::SeqIO::chadoxml # # Chris Mungall <cjm@fruitfly.org> # # You may distribute this module under the same terms as perl itself # POD documentation - main docs before the code =head1 NAME Bio::SeqIO::chadoxml - chadoxml sequence input/output stream =head1 SYNOPSIS It is probably best not to use this object directly, but rather go through the SeqIO handler system. Go: $stream = Bio::SeqIO->new(-file => $filename, -format => 'chadoxml'); while ( my $seq = $stream->next_seq() ) { # do something with $seq } =head1 DESCRIPTION This object can transform Bio::Seq objects to and from chadoxml flat file databases. CURRENTLY ONLY TO =head1 FEEDBACK =head2 Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://www.bioperl.org/MailList.shtml - About the mailing lists =head2 Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bio.perl.org http://bio.perl.org/bioperl-bugs/ =head1 AUTHOR - Chris Mungall Email cjm@fruitfly.org =head1 APPENDIX The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ =cut # Let the code begin... package Bio::SeqIO::chadoxml; use Bio::SeqIO::chado; use vars qw(@ISA); use strict; use Data::Stag::XMLWriter; @ISA = qw(Bio::SeqIO::chado); sub default_handler_class { return "Data::Stag::XMLWriter"; } 1;