Bio::EnsEMBL::Analysis::RunnableDB::Funcgen Chipotle
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Summary
Bio::EnsEMBL::Analysis::RunnableDB::Funcgen::Chipotle
Package variables
No package variables defined.
Included modules
Bio::EnsEMBL::Analysis::Config::Funcgen::Chipotle
Bio::EnsEMBL::Analysis::Config::General
Bio::EnsEMBL::Analysis::Runnable::Funcgen::Chipotle
Bio::EnsEMBL::Analysis::RunnableDB
Bio::EnsEMBL::Analysis::RunnableDB::Funcgen
Bio::EnsEMBL::Utils::Exception qw ( throw warning stack_trace_dump )
Data::Dumper
Inherit
Bio::EnsEMBL::Analysis::RunnableDB::Funcgen
Synopsis
  my $runnable = Bio::EnsEMBL::Analysis::RunnableDB::Funcgen::Chipotle->new
(
-db => $db,
-input_id => 'chromosome::20:1:100000:1',
-analysis => $analysis,
);
$runnable->fetch_input;
$runnable->run;
$runnable->write_output;
Description
This module provides an interface between the ensembl database and
the Runnable Chipotle which wraps the program ChIPoTle
Methods
newDescriptionCode
Methods description
newcode    nextTop
  Arg [1]     : 
Arg [2] :
Description : Instantiates new Chipotle runnabledb
Returntype : Bio::EnsEMBL::Analysis::RunnableDB::Funcgen::Chipotle object
Exceptions :
Example :
Methods code
newdescriptionprevnextTop
sub new {
    print "Analysis::RunnableDB::Funcgen::Chipotle::new\n";
    my ($class,@args) = @_;

    my $self = $class->SUPER::new(@args);

    $self->read_and_check_config($CONFIG);

    # add some runnable/program special params to analysis here
# make sure we have the correct analysis object
$self->check_Analysis(); # make sure we can store the correct feature_set, data_sets, and result_sets
$self->check_Sets(); return $self; } 1;
}
General documentation
AUTHORTop
Stefan Graf, Ensembl Functional Genomics - /
CONTACTTop
Post questions to the Ensembl development list: ensembl-dev@ebi.ac.uk