Bio::EnsEMBL::Analysis::RunnableDB::ProteinAnnotation Tmhmm
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Summary
  Bio::EnsEMBL::Analysis::RunnableDB::ProteinAnnotation::Tmhmm
Package variables
No package variables defined.
Included modules
Bio::EnsEMBL::Analysis::Runnable::ProteinAnnotation::Tmhmm
Bio::EnsEMBL::Analysis::RunnableDB::ProteinAnnotation
Inherit
Bio::EnsEMBL::Analysis::RunnableDB::ProteinAnnotation
Synopsis
  my $tmhmm = Bio::EnsEMBL::Analysis::RunnableDB::ProteinAnnotation::Tmhmm->new ( -db      => $db,
-input_id => $input_id,
-analysis => $analysis,
);
$tmhmm->fetch_input; # gets sequence from DB
$tmhmm->run;
$tmhmm->write_output; # writes features to to DB
Description
Methods
fetch_input
No description
Code
Methods description
None available.
Methods code
fetch_inputdescriptionprevnextTop
sub fetch_input {
  my ($self, @args) = @_;
  
  $self->SUPER::fetch_input(@args);

  my $run = Bio::EnsEMBL::Analysis::Runnable::ProteinAnnotation::Tmhmm->new(-query     => $self->query,
                                                                            -analysis  => $self->analysis,
                                                                            %{$self->parameters_hash}
                                                                            );
  $self->runnable($run);
}

1;
}
General documentation
No general documentation available.