| BlastComparaPep | Bio::EnsEMBL::Compara::RunnableDB::BlastComparaPep |
| BlastComparaPepAcross | Bio::EnsEMBL::Compara::RunnableDB::BlastComparaPepAcross |
| BreakPAFCluster | Bio::EnsEMBL::Compara::RunnableDB::BreakPAFCluster |
| BuildHomology | Bio::EnsEMBL::Compara::RunnableDB::BuildHomology |
| ClustalW | Bio::EnsEMBL::Compara::RunnableDB::ClustalW |
| CreateBlastRules | Bio::EnsEMBL::Compara::RunnableDB::CreateBlastRules |
| CreateBuildHomologyJobs | Bio::EnsEMBL::Compara::RunnableDB::CreateBuildHomologyJobs |
| CreateHclusterPrepareJobs | Bio::EnsEMBL::Compara::RunnableDB::CreateHclusterPrepareJobs |
| CreateHomology_dNdSJobs | Bio::EnsEMBL::Compara::RunnableDB::CreateHomology_dNdSJobs |
| Dummy | Bio::EnsEMBL::Compara::RunnableDB::Dummy |
| GenomeCalcStats | Bio::EnsEMBL::Compara::RunnableDB::GenomeLoadMembers |
| GenomeDumpFasta | Bio::EnsEMBL::Compara::RunnableDB::GenomeDumpFasta |
| GenomeLoadExonMembers | Bio::EnsEMBL::Compara::RunnableDB::GenomeLoadExonMembers |
| GenomeLoadMembers | Bio::EnsEMBL::Compara::RunnableDB::GenomeLoadMembers |
| GenomeSubmitPep | Bio::EnsEMBL::Compara::RunnableDB::GenomeSubmitPep |
| HclusterPrepare | Bio::EnsEMBL::Compara::RunnableDB::HclusterPrepare |
| HclusterRun | Bio::EnsEMBL::Compara::RunnableDB::HclusterRun |
| HealthCheck | Bio::EnsEMBL::Compara::RunnableDB::HealthCheck |
| HomologyCluster | Bio::EnsEMBL::Compara::RunnableDB::HomologyCluster |
| Homology_dNdS | Bio::EnsEMBL::Compara::RunnableDB::Homology_dNdS |
| LoadUniProt | Bio::EnsEMBL::Compara::RunnableDB::LoadUniProt |
| MCoffee | Bio::EnsEMBL::Compara::RunnableDB::MCoffee |
| Muscle | Bio::EnsEMBL::Compara::RunnableDB::Muscle |
| NJTREE_PHYML | Bio::EnsEMBL::Compara::RunnableDB::NJTREE_PHYML |
| OrthoTree | Bio::EnsEMBL::Compara::RunnableDB::OrthoTree |
| PAFCluster | Bio::EnsEMBL::Compara::RunnableDB::PAFCluster |
| PHYML | Bio::EnsEMBL::Compara::RunnableDB::PHYML |
| QuickTreeBreak | Bio::EnsEMBL::Compara::RunnableDB::QuickTreeBreak |
| RAP | Bio::EnsEMBL::Compara::RunnableDB::RAP |
| Sitewise_dNdS | Bio::EnsEMBL::Compara::RunnableDB::Sitewise_dNdS |
| Threshold_on_dS | Bio::EnsEMBL::Compara::RunnableDB::Threshold_on_dS |
| UpdatePAFIds | Bio::EnsEMBL::Compara::RunnableDB::UpdatePAFIds |