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Summary

Bio::EnsEMBL::ExternalData::CDSTrack::DBSQL::DBAdaptor

Package variables

Included modules

Inherit

Bio::EnsEMBL::DBSQL::DBAdaptor

Synopsis

    $db = Bio::EnsEMBL::ExternalData::CDSTrack::DBSQL::DBAdaptor->new(
        -user   => 'root',
        -dbname => 'pog',
        -host   => 'caldy',
        -driver => 'mysql',
        );

Description

This object represents the handle for a CDSTrack database

Methods

Methods description

None available.

Methods code

sub get_available_adaptors {

 
  print "Getting available adaptors\n";
  my %pairs =  (
      "Accession"                         => "Bio::EnsEMBL::ExternalData::CDSTrack::DBSQL::AccessionAdaptor",
      "CcdsStatus"                        => "Bio::EnsEMBL::ExternalData::CDSTrack::DBSQL::CcdsStatusAdaptor",
      "Ccds"                              => "Bio::EnsEMBL::ExternalData::CDSTrack::DBSQL::CcdsAdaptor",
      "GroupVersion"                      => "Bio::EnsEMBL::ExternalData::CDSTrack::DBSQL::GroupVersionAdaptor",
      "Group"                             => "Bio::EnsEMBL::ExternalData::CDSTrack::DBSQL::GroupAdaptor",
      "Interpretation"                    => "Bio::EnsEMBL::ExternalData::CDSTrack::DBSQL::InterpretationAdaptor",
      "Location"                          => "Bio::EnsEMBL::ExternalData::CDSTrack::DBSQL::LocationAdaptor",
      "Organization"                      => "Bio::EnsEMBL::ExternalData::CDSTrack::DBSQL::OrganizationAdaptor",
  );
  return (\%pairs);
}
 

1;

}

General documentation

Post questions the the EnsEMBL developer list: <ensembl-dev@ebi.ac.uk>