Bio::EnsEMBL::ExternalData::CancerGenomeProject::DBSQL DBAdaptor
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Summary
Bio::EnsEMBL::ExternalData::CancerGenomeProject::DBSQL::DBAdaptor - Class for a sequence
variation database providing external features for EnsEMBL
Package variables
No package variables defined.
Inherit
Bio::EnsEMBL::DBSQL::DBConnection
Synopsis
    $oncodb = Bio::EnsEMBL::ExternalData::CancerGenomeProject::DBSQL::DBAdaptor->new( -dbname => 'onco'
							  -user => 'root'
							  );

   # accessing sequence variations by id
   # $onco is a Bio::EnsEMBL::ExternalData::Variation object
   # the method call returns an array of Variation objects; 
   # one for each location
   my @oncos = $oncodb->get_LocusAdaptor->fetch_by_refonco_id("578");
   my $onco = pop @oncos;
Description
This object is an abstraction over the EnsEMBL SNP database. Adaptors can
be obtained for the database to allow for the storage or retrival of objects
stored within the database.
Methods
get_LocusAdaptorDescriptionCode
Methods description
get_LocusAdaptorcode    nextTop
  Function  : Retrieves a LocusAdaptor from this database
  Returntype: Bio::EnsEMBL::ExternalData::CancerGenomeProject::DBSQL::LocusAdaptor
  Exceptions: none
  Caller    : perl/default/oncoview  Bio::EnsEMBL::DBSQL::ProxyLocusAdaptor
Methods code
get_LocusAdaptordescriptionprevnextTop
sub get_LocusAdaptor {
  my $self = shift;

  return $self->_get_adaptor("Bio::EnsEMBL::ExternalData::CancerGenomeProject::DBSQL::LocusAdaptor");
}

1;
}
General documentation
FEEDBACKTop
Mailing ListsTop
  User feedback is an integral part of the evolution of this
  and other Ensebl modules. Send your comments and suggestions preferably
  to one of the Bioperl mailing lists.
  Your participation is much appreciated.

  vsns-bcd-perl@lists.uni-bielefeld.de          - General discussion
  vsns-bcd-perl-guts@lists.uni-bielefeld.de     - Technically-oriented discussion
  http://bio.perl.org/MailList.html             - About the mailing lists
Reporting BugsTop
  Report bugs to the Bioperl bug tracking system to help us keep track
  the bugs and their resolution.
  Bug reports can be submitted via email or the web:

  ensembl-dev@ebi.ac.uk                        - General discussion
AUTHOR - Heikki LehvaslaihoTop
  Email heikki@ebi.ac.uk
Address:
     EMBL Outstation, European Bioinformatics Institute
     Wellcome Trust Genome Campus, Hinxton
     Cambs. CB10 1SD, United Kingdom
APPENDIXTop
The rest of the documentation details each of the object
methods. Internal methods are usually preceded with a _