Raw content of Bio::EnsEMBL::ExternalData::CancerGenomeProject::DBSQL::LocusAdaptor
<![CDATA[# EnsEMBL Gene reading writing adaptor for mySQL
#
# Copyright EMBL-EBI 2002
#
# Author: Heikki Lehvaslaiho
#
# Date : 09.08.2002
#
=head1 NAME
Bio::EnsEMBL::ExternalData::CancerGenomeProject::DBSQL::LocusAdaptor
=head1 SYNOPSIS
A locus adaptor which sits over the CancerGenomeProject database.
Provides a means of getting CancerGenomeProject::Locus objects
out of a CancerGenomeProject database as
=head1 CONTACT
Arne Stabenau: stabenau@ebi.ac.uk
Graham McVicker : mcvicker@ebi.ac.uk
James Smith : js5@sanger.ac.uk
Roger Pettett : rmp@sanger.ac.uk
=head1 APPENDIX
=cut
use strict;
package Bio::EnsEMBL::ExternalData::CancerGenomeProject::DBSQL::LocusAdaptor;
use Bio::EnsEMBL::DBSQL::BaseAdaptor;
use Bio::EnsEMBL::Utils::Eprof qw( eprof_start eprof_end);
use vars '@ISA';
@ISA = qw(Bio::EnsEMBL::DBSQL::BaseAdaptor);
=head2 fetch_by_onco_id
Title : fetch_by_CancerGenomeProject_id
Usage : $snp_adaptor->fetch_by_snp_id($refsnp_id);
Function:
Example :
Returns : a ??
Args : id as determined by this database
=cut
sub fetch_by_onco_id {
my ($self, $id ) = @_;
my $peptide;
#lists of variations to be returned
return $peptide;
}
1;
]]>