Raw content of XrefMapper::aedes_aegypti
<![CDATA[package XrefMapper::aedes_aegypti;
use XrefMapper::BasicMapper;
use vars '@ISA';
@ISA = qw{ XrefMapper::BasicMapper };
sub get_set_lists {
#return [ ["ExonerateGappedBest1", ["aedes_aegypti","*"]] , ["ExonerateGappedBest1_aedesGnBk", ["aedes_aegypti","AedesGenBank"]] ]; #Initial + new AedesGenBank - doesn't work
#return [ ["ExonerateGappedBest1", ["aedes_aegypti","Uniprot/SWISSPROT"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","Uniprot/SPTREMBL"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","UniGene"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","EMBL"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","PDB"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","protein_id"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","GO"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","Interpro"]] ,
# ["ExonerateGappedBest1_aedesGnBk", ["aedes_aegypti","AedesGenBank"]] ]; #Initial + new AedesGenBank - doesn't work
return [["ExonerateGappedBest1", ["aedes_aegypti","*"]]]; #Initial - OK
#return [["ExonerateGappedBest1_aedesGnBk", ["aedes_aegypti","AedesGenBank"]]]; #New AedesGnBk - OK
}
sub gene_description_sources {
return ("Uniprot/SWISSPROT",
"RefSeq_peptide",
"RefSeq_dna",
"Uniprot/SPTREMBL");
}
# regexps to match any descriptons we want to filter out
sub gene_description_filter_regexps {
return ();
}1;
]]>