XrefMapper anopheles_gambiae
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Package variables
No package variables defined.
Included modules
XrefMapper::BasicMapper
XrefMapper::VBCoordinateMapper
Inherit
XrefMapper::BasicMapper
Synopsis
No synopsis!
Description
No description!
Methods
gene_description_filter_regexps
No description
Code
gene_description_sources
No description
Code
get_set_lists
No description
Code
transcript_display_xref_sources
No description
Code
Methods description
None available.
Methods code
gene_description_filter_regexpsdescriptionprevnextTop
sub gene_description_filter_regexps {
  return ();

}

1;
}
gene_description_sourcesdescriptionprevnextTop
sub gene_description_sources {
  return ("Anopheles_symbol",
	  "Uniprot/SWISSPROT",
	  "RefSeq_peptide",
	  "RefSeq_dna",
	  "Uniprot/SPTREMBL",
	  #"RefSeq_peptide_predicted",
	  #"RefSeq_dna_predicted",
	  #"EntrezGene");
          );
}
get_set_listsdescriptionprevnextTop
sub get_set_lists {
  return [["ExonerateGappedBest1_agam", ["anopheles_gambiae","*"]]];

}

# transcript, gene display_xrefs can use defaults
# since anopheles_symbol is "before" Uniprot

# If there is an Anopheles_symbol xref, use its description
}
transcript_display_xref_sourcesdescriptionprevnextTop
sub transcript_display_xref_sources {
  my @list = qw(RFAM
		miRBase
		Anopheles_symbol
		Uniprot/SWISSPROT
		Uniprot/Varsplic
		Uniprot/SPTREMBL);

  my %ignore;
  return [\@list,\%ignore];

}

# regexps to match any descriptons we want to filter out
}
General documentation
No general documentation available.