Raw content of Bio::EnsEMBL::Lite::DBAdaptor
<![CDATA[=head1 LICENSE
Copyright (c) 1999-2009 The European Bioinformatics Institute and
Genome Research Limited. All rights reserved.
This software is distributed under a modified Apache license.
For license details, please see
/info/about/code_licence.html
=head1 CONTACT
Please email comments or questions to the public Ensembl
developers list at <ensembl-dev@ebi.ac.uk>.
Questions may also be sent to the Ensembl help desk at
<helpdesk@ensembl.org>.
=cut
=head1 NAME
Bio::EnsEMBL::Lite::DBAdaptor
=head1 SYNOPSIS
$db = Bio::EnsEMBL::DBSQL::DBAdaptor->new(
-user => 'anonymous',
-dbname => 'homo_sapiens_lite_20_34c',
-host => 'ensembldb.ensembl.org',
-driver => 'mysql'
);
$snp_adaptor = $db->get_SNPAdaptor();
@snps = @{ $snp_adaptor->fetch_all_by_Slice($slice) }
=head1 DESCRIPTION
This is a database connection to the denormalised lite database. It
allows for the rapid creation of drawable objects that are too slow
to retreive from normalised data sources. Formerly this included many
Ensembl objects such as genes, transcript, exons, etc. but is now
limited to just SNPs.
=head1 METHODS
=cut
package Bio::EnsEMBL::Lite::DBAdaptor;
use vars qw(@ISA);
use strict;
@ISA = qw(Bio::EnsEMBL::DBSQL::DBAdaptor);
sub get_available_adaptors{
my %pairs = ("SNP", "Bio::EnsEMBL::Lite::SNPAdaptor");
return (\%pairs);
}
1;
]]>