Raw content of Bio::EnsEMBL::Mapper::Pair =head1 LICENSE Copyright (c) 1999-2009 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. For license details, please see /info/about/code_licence.html =head1 CONTACT Please email comments or questions to the public Ensembl developers list at <ensembl-dev@ebi.ac.uk>. Questions may also be sent to the Ensembl help desk at <helpdesk@ensembl.org>. =cut =head1 NAME Bio::EnsEMBL::Mapper::Pair =head1 SYNOPSIS =head1 DESCRIPTION Two regions mapped between different coordinate systems are each represented by a Bio::EnsEMBL::Mapper::Unit and joined together as a Bio::EnsEMBL::Mapper::Pair. =head1 METHODS =cut package Bio::EnsEMBL::Mapper::Pair; use strict; sub new { my ( $proto, $from, $to, $ori ) = @_; my $class = ref($proto) || $proto; return bless( { 'from' => $from, 'to' => $to, 'ori' => $ori }, $class ); } =head2 from, to Arg 1 Bio::EnsEMBL::Mapper::Unit $seqobj from and to represent the two regions which are mapped to each other Function accessor method Returntype Bio::EnsEMBL::Mapper::Unit Exceptions none Caller Bio::EnsEMBL::Mapper::Pair Status : Stable =cut sub to { my ( $self, $value ) = @_; if ( defined($value) ) { $self->{'to'} = $value; } return $self->{'to'}; } sub from { my ( $self, $value ) = @_; if ( defined($value) ) { $self->{'from'} = $value; } return $self->{'from'}; } =head2 ori Arg 1 Bio::EnsEMBL::Mapper::Unit $ori Function accessor method relative orientation of the the two mapped regions Returntype Bio::EnsEMBL::Mapper::Unit Exceptions none Caller Bio::EnsEMBL::Mapper::Pair Status : Stable =cut sub ori { my ( $self, $value ) = @_; if ( defined($value) ) { $self->{'ori'} = $value; } return $self->{'ori'}; } 1;