Bio::EnsEMBL::Utils::Converter bio_ens_predictionExon
SummaryIncluded librariesPackage variablesDescriptionGeneral documentationMethods
Toolbar
WebCvsRaw content
Summary
Bio::EnsEMBL::Utils::Converter::bio_ens_predictionExon
Package variables
No package variables defined.
Included modules
Bio::EnsEMBL::Exon
Bio::EnsEMBL::Utils::Converter
Bio::EnsEMBL::Utils::Converter::bio_ens
Inherit
Bio::EnsEMBL::Utils::Converter::bio_ens
Synopsis
No synopsis!
Description
Methods
_convert_single
No description
Code
Methods description
None available.
Methods code
_convert_singledescriptionprevnextTop
sub _convert_single {
    my ($self, $input) = @_;
    

    $input || $self->throw("a input object needed");
    $self->throw("a Bio::Tools::Prediction::Exon object needed")
        unless($input->isa("Bio::Tools::Prediction::Exon"));

    my $output = Bio::EnsEMBL::Exon->new(
        -start => $input->start,
        -end => $input->end,
        -strand => $input->strand
    );

    $output->score($input->score);
    $output->p_value($input->significance);

    $output->phase($input->get_tag_values("phase")); # only first element is used
$output->end_phase($input->get_tag_values("end_phase")); $output->contig($self->contig); return $output; } 1;
}
General documentation
LICENSETop
  Copyright (c) 1999-2009 The European Bioinformatics Institute and
Genome Research Limited. All rights reserved.
This software is distributed under a modified Apache license. For license details, please see /info/about/code_licence.html
CONTACTTop
  Please email comments or questions to the public Ensembl
developers list at <ensembl-dev@ebi.ac.uk>.
Questions may also be sent to the Ensembl help desk at <helpdesk@ensembl.org>.
AUTHORTop
Juguang Xiao <juguang@tll.org.sg>
SYNOPISISTop
  my $converter = new Bio::EnsEMBL::Utils::Converter(
-in => 'Bio::Tools::Prediction::Exon',
-out => 'Bio::EnsEMBL::Exon',
-contig => $ens_contig
);