package Bio::EnsEMBL::GlyphSet::variation_legend;
use strict;
use Bio::EnsEMBL::GlyphSet;
use Bio::EnsEMBL::Utils::Eprof qw(eprof_start eprof_end);
our @ISA = qw(Bio::EnsEMBL::GlyphSet);
sub _init {
my ($self) = @_;
return unless ($self->strand() == -1);
my $BOX_WIDTH = 20;
my $NO_OF_COLUMNS = 3;
my $vc = $self->{'container'};
my $Config = $self->{'config'};
my $im_width = $Config->image_width();
my $type = 'all'; #$Config->get('variation_legend', 'src');
my @colours;
return unless $Config->{'variation_legend_features'};
my %features = %{$Config->{'variation_legend_features'}};
return unless %features;
my ($x,$y) = (0,0);
my( $fontname, $fontsize ) = $self->get_font_details( 'legend' );
my @res = $self->get_text_width( 0, 'X', '', 'font'=>$fontname, 'ptsize' => $fontsize );
my $th = $res[3];
my $pix_per_bp = $self->{'config'}->transform()->{'scalex'};
my $FLAG = 0;
foreach (sort { $features{$b}->{'priority'} <=> $features{$a}->{'priority'} } keys %features) {
@colours = @{$features{$_}->{'legend'}};
$y++ unless $x==0;
$x=0;
while( my ($legend, $colour) = splice @colours, 0, 2 ) {
$FLAG = 1;
my $tocolour='';
($tocolour,$colour) = ($1,$2) if $colour =~ /(.*):(.*)/;
$self->push($self->Rect({
'x' => $im_width * $x/$NO_OF_COLUMNS,
'y' => $y * ( $th + 3 ) + 2,
'width' => $BOX_WIDTH,
'height' => $th-2,
$tocolour.'colour' => $colour,
'absolutey' => 1,
'absolutex' => 1,'absolutewidth'=>1,
}));
$self->push($self->Text({
'x' => $im_width * $x/$NO_OF_COLUMNS + $BOX_WIDTH + 3,
'y' => $y * ( $th + 3 ),
'height' => $th,
'valign' => 'center',
'halign' => 'left',
'ptsize' => $fontsize,
'font' => $fontname,
'colour' => 'black',
'text' => " $legend",
'absolutey' => 1,
'absolutex' => 1,'absolutewidth'=>1
}));
$x++;
if($x==$NO_OF_COLUMNS) {
$x=0;
$y++;
}
}
}
# Set up a separating line...
my $rect = $self->Rect({
'x' => 0,
'y' => 0,
'width' => $im_width,
'height' => 0,
'colour' => 'grey50',
'absolutey' => 1,
'absolutex' => 1,'absolutewidth'=>1,
});
$self->push($rect);
unless( $FLAG ) {
$self->errorTrack( "No SNPs in this panel" );
}
}
1;