package EnsEMBL::Web::ImageConfig::genesnpview_gene;
use strict;
use EnsEMBL::Web::ImageConfig;
use vars qw(@ISA);
@ISA = qw(EnsEMBL::Web::ImageConfig);
sub init {
my ($self) = @_;
$self->set_parameters({
'title' => 'Genes',
'show_buttons' => 'no', # show +/- buttons
'button_width' => 8, # width of red "+/-" buttons
'show_labels' => 'yes', # show track names on left-hand side
'label_width' => 100, # width of labels on left-hand side
'margin' => 5, # margin
'spacing' => 2, # spacing
'opt_halfheight' => 0, # glyphs are half-height [ probably removed when this becomes a track config ]
'opt_empty_tracks' => 0, # include empty tracks..
});
$self->create_menus(
'transcript' => 'Other Genes',
'variation' => 'Variations',
'other' => 'Other'
);
$self->load_tracks();
$self->add_tracks( 'variation',
[ 'snp_join', '', 'snp_join', { 'display' => 'on', 'strand' => 'b','tag' => 0, 'colours' => $self->species_defs->colour('variation'), 'menu' => 'no' } ],
[ 'geneexon_bgtrack', '', 'geneexon_bgtrack', { 'display' => 'normal', 'src' => 'all', 'colours' => 'bisque', 'tag' => 0, 'strand' => 'b', 'menu' => 'no' } ],
);
$self->add_tracks( 'other',
[ 'scalebar', '', 'scalebar', { 'display' => 'normal', 'strand' => 'f', 'name' => 'Scale bar', 'menu' => 'no' } ],
[ 'ruler', '', 'ruler', { 'display' => 'normal', 'strand' => 'f','notext' => 1, 'name' => 'Ruler', 'menu' => 'no' } ],
[ 'spacer', '', 'spacer', { 'display' => 'normal', 'height' => 50, 'strand' => 'r', 'menu' => 'no' } ],
);
$self->modify_configs(
[qw(transcript )],
{'display'=>'off'}
);
$self->modify_configs(
[qw(variation )],
{'menu'=>'no'}
);
$self->modify_configs(
[qw(variation_feature_variation)],
{qw(display normal), 'caption' => 'Variations', 'strand' => 'f',}
);
}
1;