Raw content of Bio::Biblio::MedlineArticle
<![CDATA[# $Id: MedlineArticle.pm,v 1.5 2002/10/22 07:45:11 lapp Exp $
#
# BioPerl module for Bio::Biblio::MedlineArticle
#
# Cared for by Martin Senger <senger@ebi.ac.uk>
# For copyright and disclaimer see below.
# POD documentation - main docs before the code
=head1 NAME
Bio::Biblio::MedlineArticle - Representation of a MEDLINE article
=head1 SYNOPSIS
$obj = new Bio::Biblio::MedlineArticle (-mesh_headings => ...);
# how are Mesh terms stored:
use Data::Dumper;
print Data::Dumper->Dump ( [$obj->mesh_headings], ['MeshHeadings']);
It produces (something like) this:
'MeshHeadings' => [
{ 'descriptorName' => 'Adult' },
{ 'descriptorName' => 'Cardiovascular Diseases',
'subHeadings' => [ { 'subHeading' => 'etiology' },
{ 'majorTopic' => 'Y',
'subHeading' => 'mortality' } ] },
{ 'descriptorName' => 'Child Development',
'subHeadings' => [ { 'majorTopic' => 'Y',
'subHeading' => 'physiology' } ] },
{ 'descriptorName' => 'Human' },
]
=head1 DESCRIPTION
A storage object for a MEDLINE article.
See its place in the class hierarchy in
http://industry.ebi.ac.uk/openBQS/images/bibobjects_perl.gif
=head2 Attributes
The following attributes are specific to this class
(however, you can also set and get all attributes defined in the parent classes):
affiliation
chemicals type: array ref of hashes
citation_owner
comment_ins type: array ref of hashes
comment_ons type: array ref of hashes
date_of_electronic_publication
erratum_fors type: array ref of hashes
erratum_in type: array ref of hashes
gene_symbols
general_notes type: array ref of hashes
grant_list_complete
grants type: array ref of hashes
medline_date
medline_id
medline_page
mesh_headings type: array ref of hashes
number_of_references
original_report_ins type: array ref of hashes
other_abstracts type: array ref of hashes
other_ids type: array ref of hashes
other_languages
pmid
republished_froms type: array ref of hashes
republished_ins type: array ref of hashes
retraction_ins type: array ref of hashes
retraction_ofs type: array ref of hashes
season
status
summary_for_patients_ins type: array ref of hashes
update_ins type: array ref of hashes
update_ofs type: array ref of hashes
vernacular_title
=head1 SEE ALSO
=over
=item *
OpenBQS home page: http://industry.ebi.ac.uk/openBQS
=item *
Comments to the Perl client: http://industry.ebi.ac.uk/openBQS/Client_perl.html
=back
=head1 FEEDBACK
=head2 Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/MailList.shtml - About the mailing lists
=head2 Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
email or the web:
bioperl-bugs@bioperl.org
http://bugzilla.bioperl.org/
=head1 AUTHORS
Heikki Lehvaslaiho (heikki@ebi.ac.uk),
Martin Senger (senger@ebi.ac.uk)
=head1 COPYRIGHT
Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved.
This module is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.
=head1 DISCLAIMER
This software is provided "as is" without warranty of any kind.
=cut
# Let the code begin...
package Bio::Biblio::MedlineArticle;
use strict;
use vars qw(@ISA);
use Bio::Biblio::Article;
@ISA = qw(Bio::Biblio::Article);
#
# a closure with a list of allowed attribute names (these names
# correspond with the allowed 'get' and 'set' methods); each name also
# keep what type the attribute should be (use 'undef' if it is a
# simple scalar)
#
{
my %_allowed =
(
_affiliation => undef,
_chemicals => 'ARRAY',
_citation_owner => undef,
_comment_ins => 'ARRAY',
_comment_ons => 'ARRAY',
_date_of_electronic_publication => undef,
_erratum_fors => 'ARRAY',
_erratum_ins => 'ARRAY',
_gene_symbols => undef,
_general_notes => 'ARRAY',
_grant_list_complete => undef,
_grants => 'ARRAY',
_medline_date => undef,
_medline_id => undef,
_medline_page => undef,
_mesh_headings => 'ARRAY',
_number_of_references => undef,
_original_report_ins => 'ARRAY',
_other_abstracts => 'ARRAY',
_other_ids => 'ARRAY',
_other_languages => undef,
_pmid => undef,
_republished_froms => 'ARRAY',
_republished_ins => 'ARRAY',
_retraction_ins => 'ARRAY',
_retraction_ofs => 'ARRAY',
_season => undef,
_status => undef,
_summary_for_patients_ins => 'ARRAY',
_update_ins => 'ARRAY',
_update_ofs => 'ARRAY',
_vernacular_title => undef,
);
# return 1 if $attr is allowed to be set/get in this class
sub _accessible {
my ($self, $attr) = @_;
exists $_allowed{$attr} or $self->SUPER::_accessible ($attr);
}
# return an expected type of given $attr
sub _attr_type {
my ($self, $attr) = @_;
if (exists $_allowed{$attr}) {
return $_allowed{$attr};
} else {
return $self->SUPER::_attr_type ($attr);
}
}
}
1;
__END__
]]>