Bio::DB::GFF::Aggregator ucsc_refgene
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Summary
Bio::DB::GFF::Aggregator::ucsc_refgene -- UCSC refGene aggregator
Package variables
No package variables defined.
Included modules
Bio::DB::GFF::Aggregator
Inherit
Bio::DB::GFF::Aggregator
Synopsis
  use Bio::DB::GFF;

  # Open the sequence database
  my $db      = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
                                   -dsn     => 'dbi:mysql:elegans42',
				   -aggregator => ['transcript','clone'],
				 );

 -------------------------------------------------
 Aggregator method: refgene
 Main method:       transcript
 Sub methods:       refGene
 -------------------------------------------------
Description
Bio::DB::GFF::Aggregator::transcript
Methods
main_nameDescriptionCode
methodDescriptionCode
part_namesDescriptionCode
Methods description
main_namecode    nextTop
 Title   : main_name
 Usage   : $aggregator->main_name
 Function: return the method for the main component
 Returns : the string "transcript:refGene"
 Args    : none
 Status  : Public
methodcodeprevnextTop
 Title   : method
 Usage   : $aggregator->method
 Function: return the method for the composite object
 Returns : the string "refgene"
 Args    : none
 Status  : Public
part_namescodeprevnextTop
 Title   : part_names
 Usage   : $aggregator->part_names
 Function: return the methods for the sub-parts
 Returns : empty list
 Args    : none
 Status  : Public
Methods code
main_namedescriptionprevnextTop
sub main_name {
  return 'transcript:refGene';
}

1;
__END__
}
methoddescriptionprevnextTop
sub method {
 'refgene'
}
part_namesdescriptionprevnextTop
sub part_names {
  return ();
}
General documentation
BUGSTop
None reported.
SEE ALSOTop
Bio::DB::GFF, Bio::DB::GFF::Aggregator
AUTHORTop
Allen Day <allenday@ucla.edu>.
Copyright (c) 2002 Allen Day, University of California, Los Angeles.
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.