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Summary

Bio::DB::GFF::Aggregator::ucsc_softberry -- UCSC softberry aggregator

Package variables

Included modules

Inherit

Bio::DB::GFF::Aggregator

Synopsis

  use Bio::DB::GFF;

  # Open the sequence database
  my $db      = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
                                   -dsn     => 'dbi:mysql:elegans42',
				   -aggregator => ['transcript','clone'],
				 );

 -------------------------------------------------
 Aggregator method: softberry
 Main method:       transcript
 Sub methods:       softberryGene
 -------------------------------------------------

Description

Bio::DB::GFF::Aggregator::transcript

Methods

Methods description

 Title   : main_name
 Usage   : $aggregator->main_name
 Function: return the method for the main component
 Returns : the string "transcript:softberryGene"
 Args    : none
 Status  : Public

 Title   : method
 Usage   : $aggregator->method
 Function: return the method for the composite object
 Returns : the string "softberry"
 Args    : none
 Status  : Public

 Title   : part_names
 Usage   : $aggregator->part_names
 Function: return the methods for the sub-parts
 Returns : empty list
 Args    : none
 Status  : Public

Methods code

sub main_name {

  return 'transcript:softberryGene';
}

1;
__END__

}

sub method {

 'softberry'

}

sub part_names {

  return ();

}

General documentation

None reported.

Bio::DB::GFF, Bio::DB::GFF::Aggregator

Allen Day <allenday@ucla.edu>.
Copyright (c) 2002 Allen Day, University of California, Los Angeles.
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.