Raw content of Bio::Factory::BlastResultFactory
<![CDATA[#-----------------------------------------------------------------
# $Id: BlastResultFactory.pm,v 1.5 2002/10/22 07:38:32 lapp Exp $
#
# BioPerl module for Bio::Factory::BlastResultFactory
#
# Cared for by Steve Chervitz <sac@bioperl.org>
#
# You may distribute this module under the same terms as perl itself
#-----------------------------------------------------------------
# POD documentation - main docs before the code
=head1 NAME
Bio::Factory::BlastResultFactory - Factory for Bio::Search::Result::BlastResult objects
=head1 SYNOPSIS
use Bio::Factory::BlastResultFactory;
my $result_fact = Bio::Factory::BlastResultFactory->new();
my $result = $result_fact->create_result( %parameters );
See documentation for create_result() for information about C<%parameters>.
=head1 DESCRIPTION
This module encapsulates code for creating Bio::Search::Result::BlastResult
and Bio::Search::HSP::BlastHSP objects from traditional BLAST report
data (i.e., non-XML formatted).
=head1 FEEDBACK
=head2 Mailing Lists
User feedback is an integral part of the evolution of this
and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists.
Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bio.perl.org/MailList.html - About the mailing lists
=head2 Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via email
or the web:
bioperl-bugs@bio.perl.org
http://bugzilla.bioperl.org/
=head1 AUTHOR
Steve Chervitz E<lt>sac@bioperl.orgE<gt>
See L<the FEEDBACK section | FEEDBACK> for where to send bug reports and comments.
=head1 COPYRIGHT
Copyright (c) 2001 Steve Chervitz. All Rights Reserved.
=head1 DISCLAIMER
This software is provided "as is" without warranty of any kind.
=head1 APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
=cut
#'
package Bio::Factory::BlastResultFactory;
use strict;
use Bio::Root::Root;
use Bio::Factory::ResultFactoryI;
use Bio::Search::Result::BlastResult;
use vars qw(@ISA);
@ISA = qw(Bio::Root::Root Bio::Factory::ResultFactoryI);
sub new {
my ($class, @args) = @_;
my $self = $class->SUPER::new(@args);
return $self;
}
=head2 create_result
Title : create_result
Usage : $result = $factory->create_result( %params );
Function: Creates a new Bio::Search::Result::BlastResult object.
Returns : A single Bio::Search::Result::BlastResult object
Args : none
=cut
sub create_result {
my ($self, @args) = @_;
my $result = Bio::Search::Result::BlastResult->new( @args );
return $result;
}
1;
]]>