Raw content of Bio::Graphics::Glyph::pinsertion
<![CDATA[package Bio::Graphics::Glyph::pinsertion;
# package to use for drawing P insertion as a triangle
# p insertion is a point (one base).
use strict;
use GD;
use vars '@ISA';
@ISA = 'Bio::Graphics::Glyph::generic';
use Bio::Graphics::Glyph::generic;
sub box {
my $self = shift;
my $half = $self->insertion_width/2;
return ($self->left-$half,$self->top,$self->right+$half,$self->bottom);
}
sub insertion_width {
my $self = shift;
return $self->option('insertion_width') || 6;
}
# override draw method
sub draw {
my $self = shift;
my $gd = shift;
my ($left,$top) = @_;
my ($x1,$y1,$x2,$y2) = $self->calculate_boundaries(@_);
my $height = $self->height;
my $half = $self->insertion_width/2;
my $fill = $self->bgcolor;
my $poly = GD::Polygon->new;
if ($self->feature->strand > 0) { #plus strand
$poly->addPt($x1 - $half, $y1);
$poly->addPt($x1 + ($half), $y1);
$poly->addPt($x1, $y2); #pointer down
} else {
$poly->addPt($x1, $y1); #pointer up
$poly->addPt($x1 - $half, $y2);
$poly->addPt($x1 + ($half), $y2);
}
$gd->filledPolygon($poly, $fill);
$gd->polygon($poly, $fill);
# add a label if requested
$self->draw_label($gd,$left,$top) if $self->option('label');
$self->draw_description($gd,$left,$top) if $self->option('description');
}
1;
=head1 NAME
Bio::Graphics::Glyph::pinsertion - The "Drosophila P-element Insertion" glyph
=head1 SYNOPSIS
See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
=head1 DESCRIPTION
This glyph was designed to show P-element insertions in the Drosophila
genome, but in fact is suitable for any type of zero-width feature.
Also see the triangle glyph.
=head2 OPTIONS
In addition to the generic options, this glyph recognizes:
Option Name Description Default
----------- ----------- -------
-insertion_width Width of glyph in pixels 3
=head1 BUGS
Please report them.
=head1 SEE ALSO
L<Bio::Graphics::Panel>,
L<Bio::Graphics::Glyph>,
L<Bio::Graphics::Glyph::arrow>,
L<Bio::Graphics::Glyph::cds>,
L<Bio::Graphics::Glyph::crossbox>,
L<Bio::Graphics::Glyph::diamond>,
L<Bio::Graphics::Glyph::dna>,
L<Bio::Graphics::Glyph::dot>,
L<Bio::Graphics::Glyph::ellipse>,
L<Bio::Graphics::Glyph::extending_arrow>,
L<Bio::Graphics::Glyph::generic>,
L<Bio::Graphics::Glyph::graded_segments>,
L<Bio::Graphics::Glyph::heterogeneous_segments>,
L<Bio::Graphics::Glyph::line>,
L<Bio::Graphics::Glyph::pinsertion>,
L<Bio::Graphics::Glyph::primers>,
L<Bio::Graphics::Glyph::rndrect>,
L<Bio::Graphics::Glyph::segments>,
L<Bio::Graphics::Glyph::ruler_arrow>,
L<Bio::Graphics::Glyph::toomany>,
L<Bio::Graphics::Glyph::transcript>,
L<Bio::Graphics::Glyph::transcript2>,
L<Bio::Graphics::Glyph::translation>,
L<Bio::Graphics::Glyph::triangle>,
L<Bio::DB::GFF>,
L<Bio::SeqI>,
L<Bio::SeqFeatureI>,
L<Bio::Das>,
L<GD>
=head1 AUTHOR
Allen Day E<lt>day@cshl.orgE<gt>, Shengqiang Shu E<lt>sshu@bdgp.lbl.govE<gt>
Copyright (c) 2001 Cold Spring Harbor Laboratory, BDGP
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
=cut
]]>