Bio::Map LinkagePosition
SummaryIncluded librariesPackage variablesSynopsisDescriptionGeneral documentation
Toolbar
WebCvsRaw content
Summary
Bio::Map::LinkagePosition - Create a Position for a Marker that will be placed
on a Bio::Map::LinkageMap
Package variables
No package variables defined.
Included modules
Bio::Map::OrderedPosition
Inherit
Bio::Map::OrderedPosition
Synopsis
    use Bio::Map::Position;
my $position = new Bio::Map::LinkagePosition(-positions => 1,
-distance => 22.1 );
# can get listing of positions my @positions = $position->each_position;
Description
Position for a Bio::Map::MarkerI compliant object that will be
placed on a Bio::Map::LinkageMap. See Bio::Map::MarkerI and
Bio::Map::LinkageMap for details
Methods description
None available.
Methods code
No methods available.
General documentation
FEEDBACKTop
Mailing ListsTop
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
  bioperl-l@bioperl.org              - General discussion
http://bioperl.org/MailList.shtml - About the mailing lists
Reporting BugsTop
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
email or the web:
  bioperl-bugs@bioperl.org
http://bugzilla.bioperl.org/
AUTHOR - Chad MatsallaTop
Email bioinformatics1@dieselwurks.com
CONTRIBUTORSTop
Lincoln Stein, lstein@cshl.org
Heikki Lehvaslaiho, heikki@ebi.ac.uk
Jason Stajich jason@bioperl.org
APPENDIXTop
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
newTop
 Title   : new
Usage : my $obj = new Bio::Map::LinkagePosition(-positions => $position,
-distance => $distance );
Function: Builds a new Bio::Map::LinkagePosition object
Returns : Bio::Map::LinkagePosition
Args : -order => the relative order of this marker on a linkage map
-positions => positions on a map
Bio::Map::PositionI methodsTop
orderTop
 Title   : order
Usage : $o_position->order($new_position) _or_
$o_position->order()
Function: get/set the order position of this position in a map
Returns :
Args : If $new_position is provided, the current position of this Position
will be set to $new_position.