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Summary

Bio::Search::Processor - DESCRIPTION of Object

Package variables

Synopsis

Give standard usage here

Description

Describe the object here

Methods

Methods description

 Title   : new
 Usage   : $proc = new Bio::Search::Processor -file      => $filename,
                                              -algorithm => 'Algorithm' ;
 Function: Used to specify and initialize a data processor of search
           algorithm results.
 Returns : A processor specific to the algorithm type, if it exists.
 Args    : -file => filename
           -algorithm => algorithm specifier
           -fh => filehandle to attach to (file or fh required)

Methods code

sub new {

    my $type = shift;
    my $proc;
    my ($module, $load, $algorithm);

    my %args = @_;

    exists $args{'-algorithm'} or do { 
	print STDERR "Must supply an algorithm!";
	return undef;
    };

    $algorithm = $args{'-algorithm'} || $args{'-ALGORITHM'};

    $module = "_<Bio/Search/Processor/$algorithm.pm";
    $load = "Bio/Search/Processor/$algorithm.pm";

    unless ( $main::{$module} ) {
	eval { require $load; };
	if ( $@ ) {
	    print STDERR <<"EOF";
$load: $algorithm cannot be found
Exception $@
For more information about the Search/Processor system please see the
Processor docs.  This includes ways of checking for processors at 
compile time, not run time
EOF
	    return undef;
	}
    }

    $proc = "Bio::Search::Processor::$algorithm"->new(@_);
    return $proc;
}

1;

}

General documentation

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Bioperl modules. Send your comments and suggestions preferably to one
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  http://bugzilla.bioperl.org/

Email amackey@virginia.edu
Describe contact details here

The rest of the documentation details each of the object
methods. Internal methods are usually preceded with a _