Raw content of Bio::SeqIO::chadosxpr
<![CDATA[# $Id: chadosxpr.pm,v 1.2 2002/12/05 13:46:36 heikki Exp $
#
# BioPerl module for Bio::SeqIO::chadosxpr
#
# Chris Mungall <cjm@fruitfly.org>
#
# You may distribute this module under the same terms as perl itself
# POD documentation - main docs before the code
=head1 NAME
Bio::SeqIO::chadosxpr - chadosxpr sequence input/output stream
=head1 SYNOPSIS
It is probably best not to use this object directly, but
rather go through the SeqIO handler system. Go:
$stream = Bio::SeqIO->new(-file => $filename, -format => 'chadosxpr');
while ( my $seq = $stream->next_seq() ) {
# do something with $seq
}
=head1 DESCRIPTION
This object can transform Bio::Seq objects to and from chadosxpr flat
file databases. CURRENTLY ONLY TO
=head1 FEEDBACK
=head2 Mailing Lists
User feedback is an integral part of the evolution of this
and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists.
Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://www.bioperl.org/MailList.shtml - About the mailing lists
=head2 Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution.
Bug reports can be submitted via email or the web:
bioperl-bugs@bio.perl.org
http://bio.perl.org/bioperl-bugs/
=head1 AUTHOR - Chris Mungall
Email cjm@fruitfly.org
=head1 APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
=cut
# Let the code begin...
package Bio::SeqIO::chadosxpr;
use Bio::SeqIO::chado;
use vars qw(@ISA);
use strict;
use Data::Stag::SxprWriter;
@ISA = qw(Bio::SeqIO::chado);
sub default_handler_class {
return "Data::Stag::SxprWriter";
}
1;
]]>