Bio::EnsEMBL::Analysis::RunnableDB::Protein::Panther

  my $seg = Bio::EnsEMBL::Analysis::RunnableDB::Protein::Panther->new ( -db      => $db,
	    	                                                        -input_id   => $input_id,
                                                                        -analysis   => $analysis,
                                                                      );
  $seg->fetch_input;  # gets sequence from DB
  $seg->run;
  $seg->output;
  $seg->write_output; # writes features to to DB

  This object wraps Bio::EnsEMBL::Analysis::Runnable::Panther
  to add functionality to read and write to databases.
  A Bio::EnsEMBL::Analysis::DBSQL::DBAdaptor is required for database access (db).
  The query sequence is provided through the input_id.
  The appropriate Bio::EnsEMBL::Analysis object
  must be passed for extraction of parameters.

	my ($self,@args)=@_;
	$self->SUPER::fetch_input(@args);
	my $run = Bio::EnsEMBL::Analysis::Runnable::ProteinAnnotation::Panther->new(-query => $self->query,-analysis => $self->analysis);
	$self->runnable($run);
} 
1;

  Gary Williams

  The rest of the documentation details each of the object methods. 
  Internal methods are usually preceded with a _.