Bio::EnsEMBL::Analysis::RunnableDB Snap
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Summary
Package variables
No package variables defined.
Included modules
Bio::EnsEMBL::Analysis::Config::General
Bio::EnsEMBL::Analysis::Runnable::Snap
Bio::EnsEMBL::Analysis::RunnableDB::Genscan
Inherit
Bio::EnsEMBL::Analysis::RunnableDB::Genscan
Synopsis
  my $runnabledb = Bio::EnsEMBL::Analysis::RunnableDB::Snap->
  new(
      -input_id => 'contig::AL805961.22.1.166258:1:166258:1',
      -db => $db,
      -analysis => $analysis,
     );
  $runnabledb->fetch_input;
  $runnabledb->run;
  $runnabledb->write_output;
Description
fetches sequence data from database an instantiates and runs the
fgenesh runnable, this inherits from the Genscan runnableDB an as such doesnt
implement much itself
Methods
runnable_pathDescriptionCode
Methods description
runnable_pathcode    nextTop
  Arg [1]   : Bio::EnsEMBL::Analysis::RunnableDB::Snap
  Function  : return the runnable path
  Returntype: string
  Exceptions: 
  Example   : my $runnable = $self->runnable_path->new
                               (
                                -query    => $self->query,
                                -program  => $self->analysis->program_file,
                                -analysis => $self->analysis,
                                %parameters,
                               );
Methods code
runnable_pathdescriptionprevnextTop
sub runnable_path {
  my ($self);
  return "Bio::EnsEMBL::Analysis::Runnable::Snap";
}

1;
}
General documentation
CONTACTTop
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