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Summary

Bio::EnsEMBL::Analysis::Tools::GeneBuildUtils::HomologyUtils - utilities for gene objects

Package variables

Included modules

Inherit

Exporter

Synopsis

  use Bio::EnsEMBL::Analysis::Tools::GeneBuildUtils::HomologyUtils qw(clone_Gene);

  or 

  use Bio::EnsEMBL::Analysis::Tools::GeneBuildUtils::HomologyUtils
  
  to get all methods

Description

All methods in this class should take a Bio::EnsEMBL::Compara::Homology
object as their first argument.
The methods provided should carry out some standard
functionality for said objects such as printing info, and
cloning

Methods

Methods description

None available.

Methods code

sub get_gene_obj_out_of_compara_homology_object {

  my ( $homology, $species ) = @_ ;

  my $gene ;
  return $gene unless $homology ;

  for my $homology_member_obj ( @{$homology->gene_list}) {
     if ($homology_member_obj->genome_db->name eq $species ) {
       $gene = $homology_member_obj->get_Gene ;
     }
  }
  return $gene ;
}

1;

}

General documentation

please send any questions to ensembl-dev@ebi.ac.uk