sub get_available_adaptors
{
my %pairs = (
map( { $_ => "Bio::EnsEMBL::DBSQL::${_}Adaptor" } qw(
AffyFeature AffyArray AffyProbe
Analysis ArchiveStableId Attribute
AssemblyExceptionFeature AssemblyMapper CoordSystem
CompressedSequence DBEntry
DensityFeature DensityType Exon
Gene KaryotypeBand MiscSet
MiscFeature OligoArray OligoFeature
OligoProbe PredictionTranscript PredictionExon
ProteinFeature ProteinAlignFeature RepeatConsensus
RepeatFeature Sequence SimpleFeature
Slice SupportingFeature Transcript
TranscriptSupportingFeature Translation UnmappedObject
UnconventionalTranscriptAssociation
AssemblySlice
) ),
map( { $_ => "Bio::EnsEMBL::Map::DBSQL::${_}Adaptor" } qw(
Marker MarkerFeature QtlFeature Qtl Ditag DitagFeature
) ),
map( { $_ => "Bio::EnsEMBL::Analysis::Tools::Otter::DBSQL::${_}Adaptor" } qw(
DnaAlignFeature DnaAlignFeatureHistory
) ),
'MetaCoordContainer' => 'Bio::EnsEMBL::DBSQL::MetaCoordContainer',
'MetaContainer' => 'Bio::EnsEMBL::DBSQL::MetaContainer',
'SNP' => 'Bio::EnsEMBL::DBSQL::ProxySNPAdaptor',
'GeneCollection' => 'Bio::EnsEMBL::Collection::Gene',
'TranscriptCollection' => 'Bio::EnsEMBL::Collection::Transcript',
'ExonCollection' => 'Bio::EnsEMBL::Collection::Exon',
'RepeatFeatureCollection' =>
'Bio::EnsEMBL::Collection::RepeatFeature' );
return (\% pairs );
}
1; } |