TOC for ensembl-analysis::modules::Bio::EnsEMBL::Analysis::Tools
BPliteLightweight BLAST parser
BPliteWrapperBio::EnsEMBL::Analysis::Tools::BPliteWrapper
BasicFilterBio::EnsEMBL::Analysis::Tools::BasicFilter
BlastDB
BlastzEnsembl specific blastz output parser
CdnaUpdateTranscriptFilterBio::EnsEMBL::Analysis::Tools::CdnaUpdateTranscriptFilter
ClusterFilterBio::EnsEMBL::Analysis::Tools::ClusterFilter
ConfigUtils
ExonerateTranscriptFilterBio::EnsEMBL::Analysis::Tools::ExonerateTranscriptFilter
FeatureFactoryBio::EnsEMBL::Analysis::Tools::FeatureFactory
FeatureFilterBio::EnsEMBL::Analysis::Tools::FeatureFilter
FilterBPliteBio::EnsEMBL::Analysis::Tools::FilterBPlite
FragmentTranscriptFilterBio::EnsEMBL::Analysis::Tools::FragmentTranscriptFilter
GeneBuildUtilsbase class for genebuild utility methods
IgTranscriptFilter
KillList
Logger
MiniSeqan artificially constructed cDNA on a genomic sequence
PairAlignDna pairwise alignment module
PolyAClippingpolA-clipping.pl
ProteinAnnotationFilterBio::EnsEMBL::Analysis::Tools::ProteinAnnotationFilter
Stashes
Utilitiesbase class which exports utility methods which don't take Bio::XX objects