| AlignSliceAdaptor | An AlignSlice can be used to map genes from one species onto another one. This adaptor is used to fetch all the data needed for an AlignSlice from the database. |
| AnchorAlignAdaptor | Bio::EnsEMBL::Compara::Production::DBSQL::AnchorAlignAdaptor |
| AnchorSeqAdaptor | |
| AttributeAdaptor | |
| BaseRelationAdaptor | |
| ConservationScoreAdaptor | Object adaptor to access data in the conservation_score table |
| ConstrainedElementAdaptor | |
| DBAdaptor | Bio::EnsEMBL::Compara::DBSQL::DBAdaptor |
| DnaAlignFeatureAdaptor | Bio::EnsEMBL::Compara::DBSQL::DnaAlignFeatureAdaptor |
| DnaFragAdaptor | Bio::EnsEMBL::Compara::DBSQL::DnaFragAdaptor |
| DnaFragRegionAdaptor | DESCRIPTION of Object |
| DomainAdaptor | DomainAdaptor |
| FamilyAdaptor | DESCRIPTION of Object This object represents a family coming from a database of protein families. |
| GenomeDBAdaptor | DESCRIPTION of Object |
| GenomicAlignAdaptor | Object adaptor to access data in the genomic_align table |
| GenomicAlignBlockAdaptor | Bio::EnsEMBL::DBSQL::Compara::GenomicAlignBlockAdaptor |
| GenomicAlignGroupAdaptor | Object to access data in genomic_align_group table |
| GenomicAlignTreeAdaptor | Object used to store and retrieve GenomicAlignTrees to/from the databases |
| HomologyAdaptor | |
| MemberAdaptor | |
| MethodLinkSpeciesSetAdaptor | Object to access data in the method_link_species_set and method_link tables |
| NCBITaxonAdaptor | DESCRIPTION of Object |
| NestedSetAdaptor | DESCRIPTION of Object |
| PeptideAlignFeatureAdaptor | Bio::EnsEMBL::Hive::DBSQL::PeptideAlignFeatureAdaptor |
| ProteinTreeAdaptor | DESCRIPTION of Object |
| SequenceAdaptor | |
| SitewiseOmegaAdaptor | DESCRIPTION of Object |
| SubsetAdaptor | |
| SyntenyRegionAdaptor | Object to access data in the synteny_region and dnafrag_region tables |
| TaxonAdaptor | DESCRIPTION of Object |