DBAdaptor documentation.

    $db = Bio::EnsEMBL::Compara::DBSQL::DBAdaptor->new(
        -user   => 'root',
        -dbname => 'pog',
        -host   => 'caldy',
        -driver => 'mysql',
        );

sub get_available_adaptors {

  my $self = shift;

  my $pairs = $self->SUPER::get_available_adaptors;
  $pairs->{'DnaFragChunk'} = "Bio::EnsEMBL::Compara::Production::DBSQL::DnaFragChunkAdaptor";
  $pairs->{'DnaFragChunkSet'} = "Bio::EnsEMBL::Compara::Production::DBSQL::DnaFragChunkSetAdaptor";
  $pairs->{'DnaCollection'} = "Bio::EnsEMBL::Compara::Production::DBSQL::DnaCollectionAdaptor";
  $pairs->{'AnalysisData'} = "Bio::EnsEMBL::Hive::DBSQL::AnalysisDataAdaptor";
  $pairs->{'AnchorSeq'} = "Bio::EnsEMBL::Compara::Production::DBSQL::AnchorSeqAdaptor";
  $pairs->{'AnchorAlign'} = "Bio::EnsEMBL::Compara::Production::DBSQL::AnchorAlignAdaptor";
  return $pairs;
}
 

1;

}