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Summary

Bio::EnsEMBL::ExternalData::Frequency- create Frequency object for subSNP population

Package variables

Synopsis

    my $snp_renderer = $snp_data->renderer;
    $snp_renderer->outputFrequencyTable;

Description

 Container object attached to SNPs population objects which holds allele frequencies for a subSNP.

Methods

Methods description

  Arg [1]    : string allele or 'otherallele' e.g. indel
  Example    : none
  Description: get/set for allele
  Returntype : string
  Exceptions : none
  Caller     : general

  Arg [1]    : integer batch ID
  Example    : none
  Description: get/set the batch id
  Returntype : integer
  Exceptions : none
  Caller     : general

  Arg [1]    : integer count
  Example    : none
  Description: get/set for number of people sampled
  Returntype : integer
  Exceptions : none
  Caller     : general

  Arg [1]    : integer frequency
  Example    : none
  Description: get/set for the allele frequency
  Returntype : integer
  Exceptions : none
  Caller     : general

  Arg [1]    : integer ssid
  Example    : none
  Description: get/set the ssid
  Returntype : integer
  Exceptions : none
  Caller     : general

Methods code

sub allele {

  my ($self, $value) =@_;
  if ( defined $value){
    $self->{'allele'} = $value;
  }
  return $self->{'allele'};

}

sub batch_id {

  my ($self, $value) =@_;
  if ( defined $value){
    $self->{'batch_id'} = $value;
  }
  return $self->{'batch_id'};
}

1;

}

sub count {

  my ($self, $value) =@_;
  if ( defined $value){
    $self->{'count'} = $value;
  }
  return $self->{'count'};

}

sub frequency {

  my ($self, $value) =@_;
  if ( defined $value){
    $self->{'frequency'} = $value;
  }
  return $self->{'frequency'};

}

sub new {

    my $class = shift;
    my $self = {};

    # rebless into own class
    bless $self, $class;
    return $self;

}

sub ssid {

  my ($self, $value) =@_;
  if ( defined $value){
    $self->{'ssid'} = $value;
  }
  return $self->{'ssid'};

}

General documentation

This code is distributed under an Apache style licence:
Please see /code_licence.html for details

Fiona Cunningham <fc1@sanger.ac.uk>