Bio::EnsEMBL::ExternalData
Population
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Summary
Bio::EnsEMBL::ExternalData::Population - create Population object for subSNP frequencies
Package variables
No package variables defined.
Synopsis
my $snp_renderer = $snp_data->renderer;
$snp_renderer->outputFrequencyTable;
Description
Container object attached to SNPs which holds allele frequency objects per population for a subSNP.
Methods
Methods description
Arg 1 : Bio::EnsEMBL::ExternalData::Frequency object
Example : none
Description: add a frequency object
Returntype : none
Exceptions : none
Caller : general |
Arg : none
Example : none
Description: return a frequency object
Returntype : array of Bio::EnsEMBL::ExternalData::Frequency objects
Exceptions : none
Caller : general |
Arg [1] : string population name
Example : none
Description: get/set for population name
Returntype : string
Exceptions : none
Caller : general |
Arg [1] : integer for population ID
Example : none
Description: get/set population ID
Returntype : int
Exceptions : none
Caller : general |
Arg [1] : string region
Example : none
Description: get/set for the geographical region of the population
Returntype : string
Exceptions : none
Caller : general |
Arg [1] : integer sample size
Example : none
Description: get/set for sample size
Returntype : integer
Exceptions : none
Caller : general |
Methods code
sub add_frequency
{ my ($self,$com) = @_;
push(@{$self->{'_frequency'}},$com);} | sub each_frequency
{ my ($self) = @_;
return @{$self->{'_frequency'}} if defined $self->{'_frequency'};
}
1;} | sub name
{ my ($self, $value) =@_;
if ( defined $value){
$self->{'name'} = $value;
}
return $self->{'name'};} | sub new
{ my $class = shift;
my $self = {};
bless $self, $class;
return $self;} | sub pop_id
{ my ($self, $value) =@_;
if ( defined $value){
$self->{'pop_id'} = $value;
}
return $self->{'pop_id'};} | sub region
{ my ($self, $value) =@_;
if ( defined $value){
$self->{'region'} = $value;
}
return $self->{'region'};} | sub sample_size
{ my ($self, $value) =@_;
if ( defined $value){
$self->{'sample_size'} = $value;
}
return $self->{'sample_size'};} | General documentation
This code is distributed under an Apache style licence:
Please see
/code_licence.html for details