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Summary

Bio::EnsEMBL::Pipeline::DBSQL::Finished::DBAdaptor

Package variables

Included modules

Inherit

Bio::EnsEMBL::Pipeline::DBSQL::DBAdaptor

Synopsis

my $dbobj = Bio::EnsEMBL::Pipeline::DBSQL::Finished::DBAdaptor->new(
-host => $dbhost,
-dbname => $dbname,
-user => $dbuser,
-pass => $dbpass,
-port => $dbport,
);

Description

Interface for the connection to the analysis database

Methods

Methods description

None available.

Methods code

sub get_available_adaptors {

  my ($self) = @_;

  my $pairs = $self->SUPER::get_available_adaptors();

  $pairs->{'Job'}                = 'Bio::EnsEMBL::Pipeline::DBSQL::Finished::JobAdaptor';
  $pairs->{'StateInfoContainer'} = 'Bio::EnsEMBL::Pipeline::DBSQL::Finished::StateInfoContainer';
  $pairs->{'HitDescription'} = 'Bio::EnsEMBL::Pipeline::DBSQL::Finished::HitDescriptionAdaptor';
  $pairs->{'DnaAlignFeature'} = 'Bio::EnsEMBL::Pipeline::DBSQL::Finished::DnaAlignFeatureAdaptor';
  $pairs->{'ProteinAlignFeature'} = 'Bio::EnsEMBL::Pipeline::DBSQL::Finished::ProteinAlignFeatureAdaptor';

  return $pairs; 
}


1;

}

General documentation

Mustapha Larbaoui <ml6@sanger.ac.uk>

Post general queries to anacode@sanger.ac.uk

The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _