Raw content of Bio::EnsEMBL::Pipeline::Finished::HitDescription
<![CDATA[
### Bio::EnsEMBL::Pipeline::Finished::HitDescription
package Bio::EnsEMBL::Pipeline::Finished::HitDescription;
use strict;
sub new {
return bless {}, shift;
}
sub hit_length {
my( $self, $hit_length ) = @_;
if ($hit_length) {
$self->{'_hit_length'} = $hit_length;
}
return $self->{'_hit_length'};
}
sub description {
my( $self, $description ) = @_;
if ($description) {
$self->{'_description'} = $description;
}
return $self->{'_description'};
}
sub taxon_id {
my( $self, $taxon_id ) = @_;
if ($taxon_id) {
$self->{'_taxon_id'} = $taxon_id;
}
return $self->{'_taxon_id'};
}
sub db_name {
my( $self, $db_name ) = @_;
if ($db_name) {
$self->{'_db_name'} = $db_name;
}
return $self->{'_db_name'};
}
1;
__END__
=head1 NAME - Bio::EnsEMBL::Pipeline::Finished::HitDescription
=head1 DESCRIPTION
The HitDescription object provides extra
information about database matches that is not
provided by the AlignFeature objects to which it
is attached.
=head1 MEHTODS
=over 4
=item hit_length
The length of the entire hit sequence - not just
the region matched.
=item description
A one line description of the sequence.
=item taxon_id
The numeric NCBI taxonomy database ID for the
node (which is usually species).
=item db_name
The database which the hit belongs to.
=back
=head2 AUTHOR
James Gilbert B<email> jgrg@sanger.ac.uk - original implementation
=head2 AUTHOR
Mustapha Larbaoui B<email> ml6@sanger.ac.uk - new pipeline
]]>