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Summary

Bio::EnsEMBL::DBSQL::DBAdaptor

Package variables

Included modules

Inherit

Bio::EnsEMBL::DBSQL::DBAdaptor

Synopsis

Description

This module provides a connection to an Ensembl variation database and
provides a means to obtain ObjectAdaptors.

Methods

Methods description

None available.

Methods code

sub get_available_adaptors {

    my %pairs = (
		 'Population' => 'Bio::EnsEMBL::Variation::DBSQL::PopulationAdaptor',
		 'Individual' => 'Bio::EnsEMBL::Variation::DBSQL::IndividualAdaptor',
		 'Variation' => 'Bio::EnsEMBL::Variation::DBSQL::VariationAdaptor',
		 'VariationFeature' => 'Bio::EnsEMBL::Variation::DBSQL::VariationFeatureAdaptor',
		 'VariationAnnotation' => 'Bio::EnsEMBL::Variation::DBSQL::VariationAnnotationAdaptor',
		 'AlleleFeature' => 'Bio::EnsEMBL::Variation::DBSQL::AlleleFeatureAdaptor',
		 'LDFeatureContainer' => 'Bio::EnsEMBL::Variation::DBSQL::LDFeatureContainerAdaptor',
#    		 'IndividualGenotype' => 'Bio::EnsEMBL::Variation::DBSQL::IndividualGenotypeAdaptor',
		 'IndividualGenotype' => 'Bio::EnsEMBL::Variation::DBSQL::CompressedGenotypeAdaptor',
		 'PopulationGenotype' => 'Bio::EnsEMBL::Variation::DBSQL::PopulationGenotypeAdaptor',
		 'TranscriptVariation' => 'Bio::EnsEMBL::Variation::DBSQL::TranscriptVariationAdaptor',
		 'VariationGroup' => 'Bio::EnsEMBL::Variation::DBSQL::VariationGroupAdaptor',
		 'AlleleGroup' => 'Bio::EnsEMBL::Variation::DBSQL::AlleleGroupAdaptor',
		 'VariationGroupFeature' => 'Bio::EnsEMBL::Variation::DBSQL::VariationGroupFeatureAdaptor',
		 'MetaCoordContainer' => 'Bio::EnsEMBL::DBSQL::MetaCoordContainer',
		 'MetaContainer' => 'Bio::EnsEMBL::Variation::DBSQL::MetaContainer',
		 'ReadCoverage' => 'Bio::EnsEMBL::Variation::DBSQL::ReadCoverageAdaptor',
#		 'CompressedGenotype' => 'Bio::EnsEMBL::Variation::DBSQL::CompressedGenotypeAdaptor',
		 'VariationFeatureCollection' => 'Bio::EnsEMBL::Variation::Collection::VariationFeature',
		 'VariationAnnotation' => 'Bio::EnsEMBL::Variation::DBSQL::VariationAnnotationAdaptor',
		 'ReadCoverageCollection' => 'Bio::EnsEMBL::Variation::DBSQL::ReadCoverageCollectionAdaptor',
                 );
    return (\%pairs);
}

1;

}

General documentation

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