Raw content of XrefMapper::Methods::ExonerateGappedBest1_agam
<![CDATA[package XrefMapper::Methods::ExonerateGappedBest1_agam;
use XrefMapper::Methods::ExonerateBasic;
use vars '@ISA';
@ISA = qw{XrefMapper::Methods::ExonerateBasic};
sub options {
return ('--gappedextension FALSE', '--model', 'affine:local', '--subopt', 'no', '--bestn', '1');
}
sub query_identity_threshold {
return 55;
}
sub target_identity_threshold {
return 55;
}
1;
]]>