Included libraries | Package variables | General documentation | Methods |
WebCvs | Raw content |
gene_description_filter_regexps | No description | Code |
gene_description_sources | No description | Code |
get_set_lists | No description | Code |
gene_description_filter_regexps | description | prev | next | Top |
return (); }1;}
gene_description_sources | description | prev | next | Top |
return ("Uniprot/SWISSPROT", "RefSeq_peptide", "RefSeq_dna", "Uniprot/SPTREMBL"); } # regexps to match any descriptons we want to filter out}
get_set_lists | description | prev | next | Top |
#return [ ["ExonerateGappedBest1", ["aedes_aegypti","*"]] , ["ExonerateGappedBest1_aedesGnBk", ["aedes_aegypti","AedesGenBank"]] ]; #Initial + new AedesGenBank - doesn't work}
#return [ ["ExonerateGappedBest1", ["aedes_aegypti","Uniprot/SWISSPROT"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","Uniprot/SPTREMBL"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","UniGene"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","EMBL"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","PDB"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","protein_id"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","GO"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","Interpro"]] ,
# ["ExonerateGappedBest1_aedesGnBk", ["aedes_aegypti","AedesGenBank"]] ]; #Initial + new AedesGenBank - doesn't work
return [["ExonerateGappedBest1", ["aedes_aegypti","*"]]]; #Initial - OK
#return [["ExonerateGappedBest1_aedesGnBk", ["aedes_aegypti","AedesGenBank"]]]; #New AedesGnBk - OK