Raw content of XrefMapper::anopheles_gambiae
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package XrefMapper::anopheles_gambiae;
use XrefMapper::BasicMapper;
use XrefMapper::VBCoordinateMapper;
use vars '@ISA';
@ISA = qw{ XrefMapper::BasicMapper };
sub get_set_lists {
return [["ExonerateGappedBest1_agam", ["anopheles_gambiae","*"]]];
}
# transcript, gene display_xrefs can use defaults
# since anopheles_symbol is "before" Uniprot
# If there is an Anopheles_symbol xref, use its description
sub gene_description_sources {
return ("Anopheles_symbol",
"Uniprot/SWISSPROT",
"RefSeq_peptide",
"RefSeq_dna",
"Uniprot/SPTREMBL",
#"RefSeq_peptide_predicted",
#"RefSeq_dna_predicted",
#"EntrezGene");
);
}
sub transcript_display_xref_sources {
my @list = qw(RFAM
miRBase
Anopheles_symbol
Uniprot/SWISSPROT
Uniprot/Varsplic
Uniprot/SPTREMBL);
my %ignore;
return [\@list,\%ignore];
}
# regexps to match any descriptons we want to filter out
sub gene_description_filter_regexps {
return ();
}
1;
]]>