Raw content of Bio::EnsEMBL::Mapper::IndelPair =head1 LICENSE Copyright (c) 1999-2009 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. For license details, please see /info/about/code_licence.html =head1 CONTACT Please email comments or questions to the public Ensembl developers list at <ensembl-dev@ebi.ac.uk>. Questions may also be sent to the Ensembl help desk at <helpdesk@ensembl.org>. =cut =head1 NAME Bio::EnsEMBL::Mapper::IndelPair =head1 SYNOPSIS =head1 DESCRIPTION Two regions mapped between different coordinate systems are each represented by a Bio::EnsEMBL::Mapper::Unit and joined together as a Bio::EnsEMBL::Mapper::Pair, when one of the regions is an indel. =head1 METHODS =cut package Bio::EnsEMBL::Mapper::IndelPair; use vars qw(@ISA); use strict; @ISA = qw(Bio::EnsEMBL::Mapper::Pair); sub new { my ($proto, @args) = @_; my $class = ref($proto) || $proto; my $self = $class->SUPER::new(@args); # create the Pair object $self->{'indel'} = 1; # and add the Indel flag return $self; } 1;