Bio::EnsEMBL PepDnaAlignFeature
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Summary
Bio::EnsEMBL::PepDnaAlignFeature - Ensembl specific pep-dna pairwise
alignment feature
Package variables
No package variables defined.
Included modules
Bio::EnsEMBL::BaseAlignFeature
Inherit
Bio::EnsEMBL::BaseAlignFeature
Synopsis
  See BaseAlignFeature
Description
No description!
Methods
_hit_unitDescriptionCode
_query_unitDescriptionCode
transformDescriptionCode
Methods description
_hit_unitcode    nextTop
  Arg [1]    : none
  Example    : none
  Description: PRIVATE implementation of abstract superclass method.  Returns
               3 as the 'unit' used for the hit sequence.
  Returntype : int
  Exceptions : none
  Caller     : Bio::EnsEMBL::BaseAlignFeature
  Status     : Stable
_query_unitcodeprevnextTop
  Arg [1]    : none
  Example    : none
  Description: PRIVATE implementation of abstract superclass method.  Returns
               1 as the 'unit' used for the query sequence.
  Returntype : int
  Exceptions : none
  Caller     : Bio::EnsEMBL::BaseAlignFeature
  Status     : Stable
transform codeprevnextTop
  Arg [1]    : none
  Example    : none
  Description: Overwrites Bio:EnsEMBL:Feature->transform as
               to give error message
  Status     : Stable
Methods code
_hit_unitdescriptionprevnextTop
sub _hit_unit {
  return 3;
}
_query_unitdescriptionprevnextTop
sub _query_unit {
  return 1;
}

1;
}
transformdescriptionprevnextTop
sub transform {
  my $self = shift;

  $self->throw( "PepDnaAlignFeatures cant be transformed as".
		" they are not on EnsEMBL coord system" );
}
General documentation
LICENSETop
  Copyright (c) 1999-2009 The European Bioinformatics Institute and
  Genome Research Limited.  All rights reserved.

  This software is distributed under a modified Apache license.
  For license details, please see

    /info/about/code_licence.html
CONTACTTop
  Please email comments or questions to the public Ensembl
  developers list at <ensembl-dev@ebi.ac.uk>.

  Questions may also be sent to the Ensembl help desk at
  <helpdesk@ensembl.org>.