Bio::EnsEMBL::Utils::Converter bio_ens_analysis
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Summary
Bio::EnsEMBL::Utils::Converter::bio_ens_analysis, a converter instance
specific for Analysis.
Package variables
No package variables defined.
Included modules
Bio::EnsEMBL::Analysis
Bio::EnsEMBL::Utils::Converter::bio_ens
Inherit
Bio::EnsEMBL::Utils::Converter::bio_ens
Synopsis
No synopsis!
Description
Methods
_convert_single
No description
Code
Methods description
None available.
Methods code
_convert_singledescriptionprevnextTop
sub _convert_single {
    my ($self, $input) = @_;

    $self->throw("a Bio::Pipeline::Analysis object needed")
        unless(ref($input) && $input->isa('Bio::Pipeline::Analysis'));
    
    my $ens_analysis = Bio::EnsEMBL::Analysis->new(
        -logic_name => $input->logic_name,
        -db => $input->db,
        -db_version => $input->db_version,
        -db_file => $input->db_file,
        -program => $input->program,
        -program_version => $input->program_version,
        -program_file => $input->program_file,
        -parameters => $input->analysis_parameters,
        -module => $input->runnable,
        -gff_source => $input->gff_source,
        -gff_feature => $input->gff_feature,
        -id =>$input->dbID
    );

    return $ens_analysis;
}
;
}
General documentation
LICENSETop
  Copyright (c) 1999-2009 The European Bioinformatics Institute and
Genome Research Limited. All rights reserved.
This software is distributed under a modified Apache license. For license details, please see /info/about/code_licence.html
CONTACTTop
  Please email comments or questions to the public Ensembl
developers list at <ensembl-dev@ebi.ac.uk>.
Questions may also be sent to the Ensembl help desk at <helpdesk@ensembl.org>.
AUTHORTop
Juguang Xiao <juguang@fugu-sg.org>
SYNOPISISTop
  my $converter = Bio::EnsEMBL::Utils::Converter(
-in => 'Bio::Pipeline::Analysis',
-out => 'Bio::EnsEMBL::Analysis'
);
my $biopipe_analysis;
my ($ens_analysis) = @{ $converter->convert( [$biopipe_analysis] ) };