Raw content of EnsEMBL::Web::Component::Website::CurrentSpecies
<![CDATA[package EnsEMBL::Web::Component::Website::CurrentSpecies;
### Lists species recorded in the ensembl_website database,
### as opposed to those configured in SiteDefs
use strict;
use warnings;
no warnings "uninitialized";
use base qw(EnsEMBL::Web::Component);
use EnsEMBL::Web::Data::Release;
sub _init {
my $self = shift;
$self->cacheable( 0 );
$self->ajaxable( 0 );
}
sub caption {
my $self = shift;
return '';
}
sub content {
my $self = shift;
my $object = $self->object;
my $html;
my $links = qq(<p><a href="/Website/AddSpecies" class="modal_link">Add a new species</a> | <a href="/Website/UpdateSpecies">Update database with current species</a></p>);
my $release_id = $object->species_defs->ENSEMBL_VERSION;
my $release = EnsEMBL::Web::Data::Release->new($release_id);
my @config_species = $object->species_defs->valid_species;
my %species_lookup;
foreach my $species (@config_species) {
$species_lookup{$species} = 'yes';
}
if ($release) {
$html = qq(<h1>Species currently in ensembl_website for Release $release_id</h1>
<div class="info-box" style="width:50%;margin:10px auto;padding:1em">
N.B. You will normally only need to update the list of current species if it is empty
(e.g. at the beginning of the release cycle).
</div>
);
my @species = $release->species;
if (@species) {
$html .= $links;
$html .= "<ul>\n";
foreach my $species (sort {$a->name cmp $b->name} @species) {
$html .= '<li>'.$species->name;
$html .= ' - NEW! (add ini file when db is available)' unless $species_lookup{$species->name};
$html .= "</li>\n";
}
$html .= "</ul>\n";
}
else {
$html .= $self->_warning('Action required', qq(No species for the current release have yet been added to the ensembl_website database!));
}
$html .= $links;
}
else {
$html .= $self->_warning('Action required', qq(Release $release_id has not been added to the ensembl_website database!));
my $form = EnsEMBL::Web::Form->new('add_release', '/Website/UpdateRelease', 'post');
$form->add_element(
'name' => 'date',
'type' => 'String',
'label' => 'Scheduled release date (YYYY-MM-DD)',
'required' => 'yes',
);
$form->add_element(
'name' => 'submit',
'type' => 'Submit',
'value' => 'Save',
);
$html .= $form->render;
}
return $html;
}
1;
]]>