TOC for bioperl-live::Bio::Tools
AlignFactoryBase object for alignment factories
AnalysisResultBase class for analysis result objects and parsers
BPbl2seqLightweight BLAST parser for pair-wise sequence alignment using the BLAST algorithm.
BPliteLightweight BLAST parser
BPpsiliteLightweight BLAST parser for (iterated) psiblast reports
BlastBioperl BLAST sequence analysis object
CodonTableBioperl codon table object
ECnumberrepresentation of EC numbers
EPCRParse ePCR output and make features
ESTScanResults of one ESTScan run
EponineResults of one Eponine run
Est2GenomeParse est2genome output, makes simple Bio::SeqFeature::Generic objects
FootPrinterDESCRIPTION of Object
GFFA Bio::SeqAnalysisParserI compliant GFF format parser
GelCalculates relative electrophoretic migration distances
GenemarkResults of one Genemark run
GenewiseResults of one Genewise run
GenomewiseResults of one Genomewise run
GenscanResults of one Genscan run
GrailResults of one Grail run
IUPACGenerates unique Seq objects from an ambiguous Seq object
LucyObject for analyzing the output from Lucy, a vector and quality trimming program from TIGR
MZEFResults of one MZEF run
OddCodesObject holding alternative alphabet coding for one protein sequence
Primer3Create input for and work with the output from the program primer3
PrintsParser for FingerPRINTScanII program
Profileparse Profile output
PromoterwiseDESCRIPTION of Object
PseudowiseResults of one Pseudowise run
RepeatMaskerDESCRIPTION of Object
RestrictionEnzymeBioperl object for a restriction endonuclease (cuts DNA at specific locations)
Segparse Seg output (filter low complexity protein sequence)
SeqAnalBioperl sequence analysis base class.
SeqPatternBioperl object for a sequence pattern or motif
SeqStatsObject holding statistics for one particular sequence
SeqWordsObject holding n-mer statistics for one sequence
SigcleaveBioperl object for sigcleave analysis
Tmhmmparse TmHMM output (transmembrane HMM)
WWWBioperl manager for web resources related to biology.
pSWpairwise Smith Waterman object