XrefMapper aedes_aegypti
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Package variables
No package variables defined.
Included modules
XrefMapper::BasicMapper
Inherit
XrefMapper::BasicMapper
Synopsis
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Description
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Methods
gene_description_filter_regexps
No description
Code
gene_description_sources
No description
Code
get_set_lists
No description
Code
Methods description
None available.
Methods code
gene_description_filter_regexpsdescriptionprevnextTop
sub gene_description_filter_regexps {
  return ();
}1;
}
gene_description_sourcesdescriptionprevnextTop
sub gene_description_sources {
  return ("Uniprot/SWISSPROT",
	  "RefSeq_peptide",
	  "RefSeq_dna",
	  "Uniprot/SPTREMBL");
}

# regexps to match any descriptons we want to filter out
}
get_set_listsdescriptionprevnextTop
sub get_set_lists {
  #return [ ["ExonerateGappedBest1", ["aedes_aegypti","*"]] , ["ExonerateGappedBest1_aedesGnBk", ["aedes_aegypti","AedesGenBank"]] ];  #Initial + new AedesGenBank - doesn't work
#return [ ["ExonerateGappedBest1", ["aedes_aegypti","Uniprot/SWISSPROT"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","Uniprot/SPTREMBL"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","UniGene"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","EMBL"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","PDB"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","protein_id"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","GO"]] ,
# ["ExonerateGappedBest1", ["aedes_aegypti","Interpro"]] ,
# ["ExonerateGappedBest1_aedesGnBk", ["aedes_aegypti","AedesGenBank"]] ]; #Initial + new AedesGenBank - doesn't work
return [["ExonerateGappedBest1", ["aedes_aegypti","*"]]]; #Initial - OK
#return [["ExonerateGappedBest1_aedesGnBk", ["aedes_aegypti","AedesGenBank"]]]; #New AedesGnBk - OK
}
General documentation
No general documentation available.